Developers and users of Tripal held a codefest before PAG XXIV to discuss current and future Tripal developments. On the second day of PAG, the Tripal community hosted a workshop titled, Tripal Database Network and Initiatives.
Tripal Codefest - January 8, 2016
Developers and users of Tripal met on January 8, 2016 to discuss current and future directions for Tripal modules and Tripal extension modules. For full proceedings and a list of attendees see the associated Google document.
Topics Discussed
- ElasticSearch
- Tripal3
- Chado
- Export of Data
- NoSQL
- Forums on Tripal.info
- Expression Data
- Comparative Map (CMap but more Tripal-y)
- Tripal.info
- Bulk Loader
- Shopping Cart
Attendees
- Ethy Cannon (Iowa State)
- Ming Chen (University of Tennessee, Knoxville)
- Connor Wytko (Washington State University)
- Brian Soto (Washington State University)
- Katheryn Buble (Washington State University)
- Emily Grau (University of Connecticut)
- Valentin Guignon (Biodiversity International)
- Nate Henry (University of Tennessee, Knoxville)
- Sook Jung (Washington State University)
- Rob Moseley (University of Tennessee, Knoxville)
- Lacey-Anne Sanderson (University of Saskatchewan)
- Meg Staton (University of Tennessee, Knoxville)
- Jill Wegrzyn (University of Connecticut)
- Pooja Umale (National Center for Genome Resources, Santa Fe, NM)
- Jacqueline D. Campbell (Iowa State University)
- Taein Lee (Washington State University)
- Sudhansu Dash (National Center for Genome Resources, Santa Fe, NM)
- Gerard Lazo (USDA-ARS, Albany, CA)
Tripal Database Network and Initiatives - January 10, 2016
A Tripal workshop was hosted at the Plant and Animal Genome XXIV Conference. Talks were given by Tripal core developers, extension developers, and website administrators.
Organizers
Lacey-Anne Sanderson - University of Saskatechewan
Margaret Staton - University of Tennessee
Talks
Tripal v2: An Overview (abstract)
Speaker: Lacey-Anne Sanderson
Presentation
The Future of Tripal: intuitive content creation, flexible data storage and web services (abstract)
Speaker: Stephen P. Ficklin
Presentation
Overview of NRSP and Planned Tripal development (abstract)
Speaker: Dorrie Main
Extending Tripal to Manage Banana Genetic Resource Information (abstract)
Speaker: Valentin Guignon
Presentation
Efforts by the Hardwood Genomics Database team to extend Tripal functionality (abstract)
Speaker: Nate Henry
Presentation
TripalBIMS: the Breeding Information Management System in Tripal (abstract)
Speaker: Sook Jung
Presentation
CAMbase: a Resource for CAM Plant Genomics (abstract)
Speaker: Robert Clifford Moseley
Presentation
TreeGenes: Enabling Visualization and Analysis in Forest Tree Genomics (abstract)
Speaker: Emily Grau
Presentation
Posters
Deliver Searchable Genomic, Genetic and Related Data Online Using Tripal (abstract)
Stephen P. Ficklin, Lacey-Anne Sanderson, Chun-Huai Cheng, Brian Soto, Connor Wytko, Alex Feltus, Sook Jung, Kirstin Bett, and Dorrie Main
Poster
Hardwood Genomics Database (HGD): a genomic and genetic web--database for hardwood trees research (abstract)
Chen M, Henry NL, Lane T, Cannon N, Coggeshall MV, Gailing O, Liang H, Romero-Severson J, Schlarbaum SE, Shumaker KL, Carlson JE, Staton ME
Poster
TreeGenes: Enabling Visualization and Analysis in Forest Tree Genomics
Emily Grau, Steven A. Demurjian, Hans Vasquez Gross, Damian Gessler, David Neale, Jill Wegrzyn
Poster